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RCSB PDB - jCEjFATCAT Structure Alignment Server V. 2.6 - All vs All Protein Structure Comparison and Alignment

CE and FATCAT are methods for calculating pairwise structure alignments. They align two polypeptide chains using characteristics of their local geometry as defined by vectors between C alpha positions. This site provide access to the Java implementation of these algorithms, called jCE and jFATCAT, as part of the Protein Comparison Tool.
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Bioinformatics Projects Discussion Board

Sunday, April 6, 2014. Sunday, April 06, 2014. Why the motif identification so difficult. Lots of tools and software are out there to discover the conserved regions. But which one to believe when each of them giving different results with the same input. Here are some tools to identify Conserved regions. The MEME SuiteMotif-based sequence analysis tools. Sunday, April 06, 2014.

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RCSB PDB - jCEjFATCAT Structure Alignment Server V. 2.6 - All vs All Protein Structure Comparison and Alignment

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CE and FATCAT are methods for calculating pairwise structure alignments. They align two polypeptide chains using characteristics of their local geometry as defined by vectors between C alpha positions. This site provide access to the Java implementation of these algorithms, called jCE and jFATCAT, as part of the Protein Comparison Tool.

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This web site states the following, "RCSB PDB - jCEjFATCAT Structure Alignment Server V." We noticed that the web page also said " All vs All Protein Structure Comparison and Alignment." It also said "org server gives you access to the developmental version of jCE and jFATCAT. You can launch a pairwise alignment of the latest development code from below. Specify what PDB chains to be aligned from here. JCE algorithm - Java Web Start. JFatCat - Java Web Start rigid. JFatCat - Java Web Start flexible. 3D alignment based on Smith Waterman." The header had CE FATCAT jCE jFATCAT structure alignment structure comparison RCSB PDB Protein Comparison Tool as the highest ranking optimized keyword.

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